Package: NetworkExtinction 1.0.3

NetworkExtinction: Extinction Simulation in Ecological Networks

Simulates the extinction of species in ecological networks and it analyzes its cascading effects, described in Dunne et al. (2002) <doi:10.1073/pnas.192407699>.

Authors:Derek Corcoran [aut, cre], M. Isidora Ávila-Thieme [aut], Fernanda S. Valdovinos [aut], Sergio A. Navarrete [aut], Pablo A. Marquet [aut], Erik Kusch [aut]

NetworkExtinction_1.0.3.tar.gz
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NetworkExtinction.pdf |NetworkExtinction.html✨
NetworkExtinction/json (API)
NEWS

# Install 'NetworkExtinction' in R:

install.packages('NetworkExtinction', repos = c('https://derek-corcoran-barrios.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/derek-corcoran-barrios/networkextinction/issues

Datasets:

Less_Connected - A sparsely connected foodweb
More_Connected - A densely connected foodweb
chilean_intertidal - The binaryfoodweb of the intertidal zone in central chile
chilean_potential - The potential foodweb of the intertidal zone in central chile
chilean_weighted - The weighted foodweb of the intertidal zone in central chile
dist - A toymodel distance matrix
mutual - A mutualistic web
net - A toymodel trophic network

On CRAN:

4.92 score 4 stars 21 scripts 219 downloads 6 exports 50 dependencies

Last updated 2 years agofrom:ff16eafaf6. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 14 2024
R-4.5-win	NOTE	Oct 14 2024
R-4.5-linux	NOTE	Oct 14 2024
R-4.4-win	NOTE	Oct 14 2024
R-4.4-mac	NOTE	Oct 14 2024
R-4.3-win	OK	Oct 14 2024
R-4.3-mac	OK	Oct 14 2024

Exports:CompareExtinctions DegreeDistribution ExtinctionOrder ExtinctionPlot RandomExtinctions SimulateExtinctions

Dependencies:backports broom cli coda codetools colorspace cpp11 doParallel doSNOW dplyr fansi farver foreach generics ggplot2 glue gtable igraph isoband iterators labeling lattice lifecycle magrittr MASS Matrix mgcv munsell network nlme patchwork pillar pkgconfig purrr R6 RColorBrewer rlang scales sna snow statnet.common stringi stringr tibble tidyr tidyselect utf8 vctrs viridisLite withr

How to use the NetworkExtinction Package

M.Isidora Avila-Thieme, Derek Corcoran, and Erik Kusch

Rendered fromNetworkExtinction.Rmdusingknitr::rmarkdownon Oct 14 2024.

Last update: 2022-10-04
Started: 2022-10-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The binaryfoodweb of the intertidal zone in central chile	chilean_intertidal
The potential foodweb of the intertidal zone in central chile	chilean_potential
The weighted foodweb of the intertidal zone in central chile	chilean_weighted
Comparison of Null hypothesis with other extinction histories	CompareExtinctions
Degree distribution of the network	DegreeDistribution
A toymodel distance matrix	dist
Extinctions analysis from custom order	ExtinctionOrder
Plots the extinctions history of a network	ExtinctionPlot
A sparsely connected foodweb	Less_Connected
A densely connected foodweb	More_Connected
A mutualistic web	mutual
A toymodel trophic network	net
Random extinction	RandomExtinctions
Extinctions analysis for ecological networks	SimulateExtinctions